bioconductor 包的安裝
安裝R，並啟動R。
> source("http://bioconductor.org/biocLite.R")
> biocLite()
Using R version 2.10.0 (R-devel), biocinstall version 2.5.5.
Installing Bioconductor version 2.5 packages:
[1] "affy" "affydata" "affyPLM" "annaffy"
[5] "annotate" "Biobase" "biomaRt" "Biostrings"
[9] "DynDoc" "gcrma" "genefilter" "geneplotter"
[13] "hgu95av2.db" "limma" "marray" "multtest"
[17] "vsn" "xtable" "affyQCReport"
Please wait...
also installing the dependencies ‘DBI’, ‘RSQLite’, ‘bitops’, ‘affyio’, ‘preprocessCore’, ‘GO.db’, ‘KEGG.db’, ‘AnnotationDbi’, ‘XML’, ‘RCurl’, ‘IRanges’, ‘RColorBrewer’, ‘org.Hs.eg.db’, ‘simpleaffy’
試開URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/DBI_0.2-4.zip'
Content type 'application/zip' length 375508 bytes (366 Kb)
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downloaded 366 Kb
試開URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/RSQLite_0.7-3.zip'
Content type 'application/zip' length 544274 bytes (531 Kb)
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試開URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/bitops_1.0-4.1.zip'
Content type 'application/zip' length 17325 bytes (16 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyio_1.13.5.zip'
Content type 'application/zip' length 82858 bytes (80 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/preprocessCore_1.7.9.zip'
Content type 'application/zip' length 118603 bytes (115 Kb)
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試開URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/GO.db_2.3.5.zip'
Content type 'application/zip' length 15170627 bytes (14.5 Mb)
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試開URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/KEGG.db_2.3.5.zip'
Content type 'application/zip' length 1608188 bytes (1.5 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/AnnotationDbi_1.7.20.zip'
Content type 'application/zip' length 5035348 bytes (4.8 Mb)
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試開URL’http://bioconductor.org/packages/2.5/extra/bin/windows/contrib/2.10/XML_2.6-0.zip'
Content type 'application/zip' length 2229321 bytes (2.1 Mb)
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試開URL’http://bioconductor.org/packages/2.5/extra/bin/windows/contrib/2.10/RCurl_1.2-1.zip'
Content type 'application/zip' length 1789923 bytes (1.7 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/IRanges_1.3.99.zip'
Content type 'application/zip' length 1521672 bytes (1.5 Mb)
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試開URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/RColorBrewer_1.0-2.zip'
Content type 'application/zip' length 23811 bytes (23 Kb)
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試開URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/org.Hs.eg.db_2.3.6.zip'
Content type 'application/zip' length 37316242 bytes (35.6 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/simpleaffy_2.21.3.zip'
Content type 'application/zip' length 794649 bytes (776 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affy_1.23.12.zip'
Content type 'application/zip' length 2033590 bytes (1.9 Mb)
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downloaded 1.9 Mb
試開URL’http://bioconductor.org/packages/2.5/data/experiment/bin/windows/contrib/2.10/affydata_1.11.10.zip'
Content type 'application/zip' length 12756979 bytes (12.2 Mb)
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downloaded 12.2 Mb
試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyPLM_1.21.4.zip'
Content type 'application/zip' length 3968938 bytes (3.8 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/annaffy_1.17.2.zip'
Content type 'application/zip' length 371140 bytes (362 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/annotate_1.23.4.zip'
Content type 'application/zip' length 2202749 bytes (2.1 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/Biobase_2.5.8.zip'
Content type 'application/zip' length 2378491 bytes (2.3 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/biomaRt_2.1.0.zip'
Content type 'application/zip' length 315686 bytes (308 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/Biostrings_2.13.54.zip'
Content type 'application/zip' length 2149067 bytes (2.0 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/DynDoc_1.23.1.zip'
Content type 'application/zip' length 99928 bytes (97 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/gcrma_2.17.4.zip'
Content type 'application/zip' length 222812 bytes (217 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/genefilter_1.26.4.zip'
Content type 'application/zip' length 705409 bytes (688 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/geneplotter_1.23.3.zip'
Content type 'application/zip' length 1784562 bytes (1.7 Mb)
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試開URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/hgu95av2.db_2.3.5.zip'
Content type 'application/zip' length 549126 bytes (536 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/limma_3.0.3.zip'
Content type 'application/zip' length 1205953 bytes (1.2 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/marray_1.23.0.zip'
Content type 'application/zip' length 5275041 bytes (5.0 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/multtest_2.1.3.zip'
Content type 'application/zip' length 1642453 bytes (1.6 Mb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/vsn_3.13.7.zip'
Content type 'application/zip' length 1494717 bytes (1.4 Mb)
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試開URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/xtable_1.5-5.zip'
Content type 'application/zip' length 177954 bytes (173 Kb)
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試開URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyQCReport_1.23.1.zip'
Content type 'application/zip' length 229539 bytes (224 Kb)
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package 'DBI' successfully unpacked and MD5 sums checked
package 'RSQLite' successfully unpacked and MD5 sums checked
package 'bitops' successfully unpacked and MD5 sums checked
package 'affyio' successfully unpacked and MD5 sums checked
package 'preprocessCore' successfully unpacked and MD5 sums checked
package 'GO.db' successfully unpacked and MD5 sums checked
package 'KEGG.db' successfully unpacked and MD5 sums checked
package 'AnnotationDbi' successfully unpacked and MD5 sums checked
package 'XML' successfully unpacked and MD5 sums checked
package 'RCurl' successfully unpacked and MD5 sums checked
package 'IRanges' successfully unpacked and MD5 sums checked
package 'RColorBrewer' successfully unpacked and MD5 sums checked
package 'org.Hs.eg.db' successfully unpacked and MD5 sums checked
package 'simpleaffy' successfully unpacked and MD5 sums checked
package 'affy' successfully unpacked and MD5 sums checked
package 'affydata' successfully unpacked and MD5 sums checked
package 'affyPLM' successfully unpacked and MD5 sums checked
package 'annaffy' successfully unpacked and MD5 sums checked
package 'annotate' successfully unpacked and MD5 sums checked
package 'Biobase' successfully unpacked and MD5 sums checked
package 'biomaRt' successfully unpacked and MD5 sums checked
package 'Biostrings' successfully unpacked and MD5 sums checked
package 'DynDoc' successfully unpacked and MD5 sums checked
package 'gcrma' successfully unpacked and MD5 sums checked
package 'genefilter' successfully unpacked and MD5 sums checked
package 'geneplotter' successfully unpacked and MD5 sums checked
package 'hgu95av2.db' successfully unpacked and MD5 sums checked
package 'limma' successfully unpacked and MD5 sums checked
package 'marray' successfully unpacked and MD5 sums checked
package 'multtest' successfully unpacked and MD5 sums checked
package 'vsn' successfully unpacked and MD5 sums checked
package 'xtable' successfully unpacked and MD5 sums checked
package 'affyQCReport' successfully unpacked and MD5 sums checked
The downloaded packages are in
C:\Documents and Settings\Administrator\Local Settings\Temp\RtmpCDatG2\downloaded_packages
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