數據庫
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. 基因組變異數據的功能注釋,人重必用
KEGG:a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.
EggNOG:(evolutionary genealogy of genes: Non-supervised Orthologous Groups), a public resource that provides Orthologous Groups (OGs) of proteins at different taxonomic levels, each with integrated and summarized functional annotations.(分析蛋白的直系同源組,同時作功能注釋,在腸道微生物分析時會用到)
Meta&16S
greengenes:a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Silva:A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.
HPMCD:the database of human microbial communities from metagenomic datasets and microbial reference genomes (Paper) 人類泛微生物群體
GeneCards:人類基因的綜合數據庫,提供簡明的基因組,蛋白質組,轉錄,遺傳和功能上所有已知和預測的人類基因。GeneCards中的信息功能信息包括指向疾病的關系,突變和多態性,基因表達,基因功能,途徑,蛋白質與蛋白質相互作用,相關的葯物及化合物和切割等先進的研究抗體的試劑和工具等,重組蛋白,克隆,表達分析和RNAi試劑等。 (各種ID相互轉換)
持續整理~