生物信息數據庫
搜遍全網都找不到一個開發生物信息數據庫的教程。
其實有些數據庫的工作量並不大，只是把線下的一些分析結果上傳到服務器上，供用戶搜索而已。
網站上可視化的對象只有兩個：表格和圖片。
一些稍微復雜的結果就是network，這個有現成的插件可以實現，比較簡單。
開發流程
找一個類似的、自己覺得還行的數據庫網站，從模仿開始。
學會用Chrome看網頁源碼，了解其大致設計理念，實現方法。
安裝Tomcat
https://tomcat.apache.org/download-90.cgi
報錯：
$ sudo sh ./startup.sh Unable to find any JVMs matching version "(null)". No Java runtime present, try --request to install. Neither the JAVA_HOME nor the JRE_HOME environment variable is defined At least one of these environment variable is needed to run this program
MacOS X does not come with Java Development Kits (JDKs) pre-installed. Run java -version in the terminal and you may be prompted to install Java.
Unless you already have JVM installed, in which case you will see the build version number.
安裝java，`java -version`
運行Tomcat
sudo sh ./startup.sh ##### sh ./shutdown.sh
此時應該可以正常打開http://localhost:8080/
安裝MySQL
加路徑：export PATH=/usr/local/mysql/bin:$PATH
JQuery安裝
可視化
Datatables
HighCharts
d3
in-house R scripts
證書
CC Licenses
開發工具
eclipse
重要考慮
網站流量的管理，不要被用戶的操作搞崩了。
webserver必須要考慮算法的速度，服務器性能，排隊系統。
一定要構建出網站的本地版，迎合大數據客戶的需求。
Django
安裝比較簡單，pip install django
解決遠程訪問問題，Django運行訪問項目出現的問題:DisallowedHost，修改 setting.py 文件，ALLOWED_HOSTS = ['*']
`python manage.py runserver`
GitHub協作開發環境
GitHub真的不只是一個code cloud而已，它是超級強大的團隊協作和版本管理的平台。
GitHub怎么合作代碼最安全？
如何使用 GitHub？ - 基本操作
團隊協作中的 Github flow 工作流程 - 團隊協作
COPY一個網站
搜索：如何快速copy一個網站的html和css
如何扒一個網站完整的HTML+CSS源碼，讓所有網站都成為你的模板庫
基本的html、css、JS技能
參考
示例：CancerSEA: a cancer single-cell state atlas
CancerSEA is freely available to the research community at http://biocc.hrbmu.edu.cn/CancerSEA or http://202.97.205.69/CancerSEA and requires no registration or login. CancerSEA is deployed using tomcat (version 7.0.47) and tested in Mozilla Firefox, Google Chrome, and Apple Safari browsers. All the data are stored and queried by MySQL (version 5.6.40). Tables are visualized by Datatables (version 1.10.16). Graph charts are generated by HighCharts (version 6.1.0), d3 (version 5.4.0) and in-house R scripts.
Development of FerrDb
FerrDb was developed with HTML, CSS and JavaScript. JavaScript libraries jQuery (https://jquery.com/) and jQuery UI (https://jqueryui.com/) were used to enhance interactive features of the website. DataTables (https://datatables.net/) was used to display the data in tables. Cytoscape.js was used to visualize regulation networks on the web page (11). Annotation data sets were stored in JSON files, which were used as the core database to drive FerrDb. To keep gene symbols in FerrDb consistent with those in the HGNC database (https://www.genenames.org/), HGNC’s REST API (application programming interface) was used to verify genes in FerrDb. The FerrDb website was hosted by an Apache (http://www.apache.org/) web server that was deployed as an Amazon AWS EC2 instance (https://aws.amazon.com/) running Ubuntu 16.04 LTS (https://ubuntu.com/).
示例：A machine-compiled database of genome-wide association studies
http://mulinlab.org/vsampler/index.html
http://biocc.hrbmu.edu.cn/CancerSEA/home.jsp
http://www.zhounan.org/ferrdb/
http://gwaskb.stanford.edu/
練手教程