報錯
R version 4.0.3
$R
BiocManager::install("clusterProfiler")
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :
object 'get_fun_from_pkg' not found
Error: unable to load R code in package ‘clusterProfiler’
Execution halted
ERROR: lazy loading failed for package ‘clusterProfiler’
解決
原因是rvcheck版本太舊。
1.重新安裝rvcheck
packageurl <- "https://cran.r-project.org/src/contrib/Archive/rvcheck/rvcheck_0.1.8.tar.gz"
install.packages(packageurl, repos=NULL, type="source")
remove.packages("clusterProfiler")
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clusterProfiler")
2.用conda
conda install -c bioconda bioconductor-clusterprofiler