blast 數據庫說明


Peptide Sequence Databases蛋白序列的數據庫

nr
All non-redundant GenBank CDS translations + RefSeq Proteins + PDB + SwissProt + PIR + PRF
所有非冗余的的GenBank CDS區的翻譯序列 + 參考序列的蛋白 + PDB數據庫 + SwissProt蛋白數據庫 + PRF蛋白數據庫

refseq
RefSeq protein sequences from NCBI’s Reference Sequence Project.
所有NCBI的參考序列

swissprot
Last major release of the SWISS-PROT protein sequence database (no updates).
swissprot的蛋白數據庫

pat
Proteins from the Patent division of GenPept.
專利的蛋白數據庫

pdb
Sequences derived from the 3-dimensional structure from Brookhaven Protein Data Bank.
PDB數據庫

month
All new or revised GenBank CDS translation+PDB+SwissProt+PIR+PRF released in the last 30 days.
一個月內新增加的蛋白序列

env_nr
Protein sequences from environmental samples.
來自environmental samples的蛋白序列

Nucleotide Sequence Databases核酸數據庫
nr
All GenBank + RefSeq Nucleotides + EMBL + DDBJ + PDB sequences (excluding HTGS0,1,2, EST, GSS, STS, PAT, WGS). No longer “non-redundant”.
所有GenBank的核酸序列 + 參考序列中的核酸序列+ EMBL +DDBJ +PDB核酸序列(但不包括HTG,EST,GSS等序列)

refseq_rna
RNA entries from NCBI’s Reference Sequence project
NCBI參考序列中的核酸序列

refseq_genomic
Genomic entries from NCBI’s Reference Sequence project
NCBI參考序列中的基因組序列

est
Database of GenBank + EMBL + DDBJ sequences from EST Divisions
來自GenBank + EMBL + DDBJ 的EST序列

est_human
Human subset of est.
人的EST序列

est_mouse
Mouse subset.
小鼠的EST序列

est_others
Non-Mouse, non-Human subset of est.、
除了人與小鼠之外的EST序列

gss
Genome Survey Sequence, includes single-pass genomic data, exon-trapped sequences, and Alu PCR sequences.

htgs
Unfinished High Throughput Genomic Sequences: phases 0, 1 and 2 (finished, phase 3 HTG sequences are in nr)
未發布的高通量的基因組測序

pat
Nucleotides from the Patent division of GenBank.
專利的核酸序列

pdb
Sequences derived from the 3-dimensional structure from Brookhaven Protein Data Bank
PDB核酸序列

month
All new or revised GenBank + EMBL + DDBJ + PDB sequences released in the last 30 days.
一個月內新增的核酸序列

dbsts
Database of GenBank+EMBL+DDBJ sequences from STS Divisions .
STS數據庫

chromosome
A database with complete genomes and chromosomes from the NCBI Reference Sequence project..
NCBI參考序列計划中所有的完整基因組和染色體序列

wgs
A database for whole genome shotgun sequence entries.
基因組鳥槍法測序得到的序列

env_nt
Nucleotide sequences from environmental samples, including those from Sargasso Sea and Mine Drainage
projects.
來自environmental samples的核酸序列。

附:NCBI在線Blast的圖文說明


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