fastq-dump 報錯 解決方案

命令行：

~/sratoolkit/sratoolkit.2.3.2/bin/fastq-dump --split-spot --gzip xxxx.sra

報錯信息:

fastq-dump.2.3.2 err: name not found while resolving tree within virtual file system module - failed to open 'xxxx.sra'

解決方法：

找不到xxx.sra，就給它全路徑就可以了

the problem happens when you use a local path for the SRA file. Try using the absolute path! fastq-dump /data/etc/SRR00000.sra should do the trick

 

http://seqanswers.com/forums/showthread.php?t=29447