在docker容器中python3.5環境下使用DIGITS訓練caffe模型


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此處使用的基礎鏡像為 nvcr.io/nvidia/digits:18.06,鏡像大小為6.04GB,可從nvidia官方pull此鏡像;

容器配置:

  CUDA:9.0

  CUDNN:7.0

注:此文檔建立在已會使用python2.7版本的DIGITS基礎之上

  使用CUDA9是因為要使用tensorflow_hub,版本需要兼容

  tensorflow-gpu==1.12.0

  tensorflow-hub==0.5.0

 

鏡像中含有python3.5與python2.7兩個版本,直接使用python3.5

修改系統python默認值,使用python3為默認啟動:

  sudo update-alternatives --install /usr/bin/python python /usr/bin/python2 100

  sudo update-alternatives --install /usr/bin/python python /usr/bin/python3 150

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一、編譯安裝caffe

從github下載caffe源碼,准備編譯,下載地址:https://github.com/BVLC/caffe.git

【CUDA與CUDNN請查找對應的安裝教程,此處忽略】

進入caffe目錄

1、安裝依賴

  sudo apt-get install libprotobuf-dev libleveldb-dev libsnappy-dev libopencv-dev libhdf5-serial-dev protobuf-compiler

  sudo apt-get install —no-install-recommends libboost-all-dev

  sudo apt-get install libopenblas-dev liblapack-dev libatlas-base-dev

  sudo apt-get install libgflags-dev libgoogle-glog-dev liblmdb-dev

2、修改Makefile.config文件:

  sudo cp Makefile.config.example Makefile.config

  根據需求修改Makefile.config中的內容,我修改之后的內容如下:

## Refer to http://caffe.berkeleyvision.org/installation.html
# Contributions simplifying and improving our build system are welcome!

# cuDNN acceleration switch (uncomment to build with cuDNN).
USE_CUDNN := 1

# CPU-only switch (uncomment to build without GPU support).
# CPU_ONLY := 1

# uncomment to disable IO dependencies and corresponding data layers
USE_OPENCV := 1
# USE_LEVELDB := 0
# USE_LMDB := 0
# This code is taken from https://github.com/sh1r0/caffe-android-lib
# USE_HDF5 := 0

# uncomment to allow MDB_NOLOCK when reading LMDB files (only if necessary)
# You should not set this flag if you will be reading LMDBs with any
# possibility of simultaneous read and write
# ALLOW_LMDB_NOLOCK := 1

# Uncomment if you're using OpenCV 3
# OPENCV_VERSION := 3

# To customize your choice of compiler, uncomment and set the following.
# N.B. the default for Linux is g++ and the default for OSX is clang++
# CUSTOM_CXX := g++

# CUDA directory contains bin/ and lib/ directories that we need.
CUDA_DIR := /usr/local/cuda
# On Ubuntu 14.04, if cuda tools are installed via
# "sudo apt-get install nvidia-cuda-toolkit" then use this instead:
# CUDA_DIR := /usr

# CUDA architecture setting: going with all of them.
# For CUDA < 6.0, comment the *_50 through *_61 lines for compatibility.
# For CUDA < 8.0, comment the *_60 and *_61 lines for compatibility.
# For CUDA >= 9.0, comment the *_20 and *_21 lines for compatibility.
CUDA_ARCH :=-gencode arch=compute_30,code=sm_30 \
-gencode arch=compute_35,code=sm_35 \
-gencode arch=compute_50,code=sm_50 \
-gencode arch=compute_52,code=sm_52 \
-gencode arch=compute_60,code=sm_60 \
-gencode arch=compute_61,code=sm_61 \
-gencode arch=compute_61,code=compute_61

# BLAS choice:
# atlas for ATLAS (default)
# mkl for MKL
# open for OpenBlas
BLAS := atlas
# Custom (MKL/ATLAS/OpenBLAS) include and lib directories.
# Leave commented to accept the defaults for your choice of BLAS
# (which should work)!
# BLAS_INCLUDE := /path/to/your/blas
# BLAS_LIB := /path/to/your/blas

# Homebrew puts openblas in a directory that is not on the standard search path
# BLAS_INCLUDE := $(shell brew --prefix openblas)/include
# BLAS_LIB := $(shell brew --prefix openblas)/lib

# This is required only if you will compile the matlab interface.
# MATLAB directory should contain the mex binary in /bin.
# MATLAB_DIR := /usr/local
# MATLAB_DIR := /Applications/MATLAB_R2012b.app

# NOTE: this is required only if you will compile the python interface.
# We need to be able to find Python.h and numpy/arrayobject.h.
# PYTHON_INCLUDE := /usr/include/python2.7 \
# /usr/lib/python2.7/dist-packages/numpy/core/include
# Anaconda Python distribution is quite popular. Include path:
# Verify anaconda location, sometimes it's in root.
# ANACONDA_HOME := $(HOME)/anaconda
# PYTHON_INCLUDE := $(ANACONDA_HOME)/include \
# $(ANACONDA_HOME)/include/python2.7 \
# $(ANACONDA_HOME)/lib/python2.7/site-packages/numpy/core/include

# Uncomment to use Python 3 (default is Python 2)
PYTHON_LIBRARIES := boost_python3 python3.5m
PYTHON_INCLUDE := /usr/include/python3.5 \
/usr/include/ \
/usr/lib/python3.5/dist-packages/numpy/core/include

# We need to be able to find libpythonX.X.so or .dylib.
PYTHON_LIB := /usr/lib \
/usr/lib/python3.5 \
/usr/local/lib/python3.5
# PYTHON_LIB := $(ANACONDA_HOME)/lib

# Homebrew installs numpy in a non standard path (keg only)
# PYTHON_INCLUDE += $(dir $(shell python -c 'import numpy.core; print(numpy.core.__file__)'))/include
# PYTHON_LIB += $(shell brew --prefix numpy)/lib

# Uncomment to support layers written in Python (will link against Python libs)
WITH_PYTHON_LAYER := 1

# Whatever else you find you need goes here.
INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include /usr/include/hdf5/serial
LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/hdf5/serial

# If Homebrew is installed at a non standard location (for example your home directory) and you use it for general dependencies
# INCLUDE_DIRS += $(shell brew --prefix)/include
# LIBRARY_DIRS += $(shell brew --prefix)/lib

# NCCL acceleration switch (uncomment to build with NCCL)
# https://github.com/NVIDIA/nccl (last tested version: v1.2.3-1+cuda8.0)
# USE_NCCL := 1

# Uncomment to use `pkg-config` to specify OpenCV library paths.
# (Usually not necessary -- OpenCV libraries are normally installed in one of the above $LIBRARY_DIRS.)
# USE_PKG_CONFIG := 1

# N.B. both build and distribute dirs are cleared on `make clean`
BUILD_DIR := build
DISTRIBUTE_DIR := distribute

# Uncomment for debugging. Does not work on OSX due to https://github.com/BVLC/caffe/issues/171
# DEBUG := 1

# The ID of the GPU that 'make runtest' will use to run unit tests.
TEST_GPUID := 0

# enable pretty build (comment to see full commands)
Q ?= @

3、修改Makefile文件: 

  ①、大概在427行

    將:
    NVCCFLAGS +=-ccbin=$(CXX) -Xcompiler-fPIC $(COMMON_FLAGS)
    替換為:
    NVCCFLAGS += -D_FORCE_INLINES -ccbin=$(CXX) -Xcompiler -fPIC $(COMMON_FLAGS)

  ②、大概在182行

    將:
    LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_hl hdf5
    改為:
    LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_serial_hl hdf5_serial
4、開始編譯:

  ①、make all

  ②、make runtest

  ③、make pycaffe

  注:中途不出錯,則證明編譯安裝成功python3.5的caffe,如果拋出異常,則根據error搜索對應解決方案。

  追加幾個我遇到的異常與對應解決方案:

  異常:fatal error: pyconfig.h: No such file or directory

  解決:export CPLUS_INCLUDE_PATH=/usr/include/python2.7

  異常:/usr/bin/ld: cannot find -lboost_python3

  解決:cd /usr/lib/x86_64-linux-gnu

        sudo ln -s libboost_python-py35.so libboost_python3.so

5、使用caffe:

  進入python解釋器:python

  import caffe

  異常:ImportError: dynamic module does not define module export function (PyInit__caffe)

  解決:將編譯的caffe路徑添加到環境變量中:export PYTHONPATH=/opt/caffe/python/:$PYTHONPATH

 

二、安裝DIGITS,地址:https://github.com/NVIDIA/DIGITS.git

1、digits官方沒有推出Python3版本,需要自己把py2的代碼升級到py3

  代碼語法問題可以使用python3自帶的升級腳本(腳本位置很好找,找不到的請百度):python 3.5/Tools/scripts/2to3.py

2、使用2to3腳本升級完語法之后,代碼里還有很多py3不兼容的地方,請逐一修改

3、下載DIGITS的python依賴,pip install -r requirements.txt -i https://pypi.tuna.tsinghua.edu.cn/simple

3、代碼修改完成之后,設置最后一步,將caffe的啟動文件軟連接到/usr/local/bin/下:

  ln -s 源地址 目標地址

  示例:ln -s /opt/caffe/build/tools/caffe /usr/local/bin/caffe

  (把自己編譯的opt下的caffe啟動文件連接到系統path路徑中)

 

三、啟動DIGITS,使用caffe訓練模型

1、進入DIGITS目錄,啟動服務

  python -m digits 

2、用瀏覽器訪問服務,創建數據集,創建模型即可。

 

 

 

 

PS:有DIGITS二次開發經驗的朋友可以聯系交流,目前主要開發tensorflow_hub,tensorflow_pb,tensorflow,tensorRT等相關功能。


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