Dynamic networks | 動態網絡


Dynamic networks reveal key players in aging

系統生物學中的網絡分析

 

網絡的拓撲結構:topological properties,

網絡的度:whole network connectivity (degree),節點度是指和該節點相關聯的邊的條數,又稱關聯度。 特別地,對於有向圖, 節點的入度 是指進入該節點的邊的條數; 節點的出度是指從該節點出發的邊的條數。



intramodular connectivity:Intramodular connectivity measures how connected, or co-expressed, a given gene is with respect to the genes of a particular module. Thus, intramodular connectivity is also the connectivity in the subnetwork defined by the module. The intramodular connectivity may be interpreted as a measure of module membership.
topological overlap:Topological overlap can serve as an important filter to counter the effects of spurious or missing connections between network nodes.
clustering coefficient:a measure of the degree to which nodes in a graph tend to cluster together.
density:The mean adjacency (connection strength) among all nodes in the network.

 

An Introduction to Graph Theory and Network Analysis (with Python codes)

Networks analysis bioinformatics

 

閱讀文章:

Gene network interconnectedness and the generalized topological overlap measure

Overview of network terminology

 


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