安裝 R 包報錯 clang: error: unsupported option '-fopenmp' 的解決方法


MacOS 上安裝 R 包

install.packages("data.table")

后面提示是否安裝需要編譯的版本:
Do you want to install from sources the package which needs compilation?y/n
選擇了 y 之后,報錯

clang: error: unsupported option '-fopenmp' 

網上找到的解決方法是:

  1. 安裝 clang-omp
brew install clang-omp

但是提示:

Error: No available formula with the name "clang-omp"
==> Searching for a previously deleted formula (in the last month)...
Error: No previously deleted formula found.
==> Searching for similarly named formulae...
==> Searching local taps...
Error: No similarly named formulae found.
==> Searching taps...
==> Searching taps on GitHub...
Error: No formulae found in taps.
  1. 原來是 clang-omp 遷移到了 llvm 中,遂安裝 llvm
brew install llvm
ln -s /usr/local/opt/llvm/bin/clang /usr/local/bin/clang-omp
  1. 但是還是同樣的報錯,觀察錯誤提示:
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c assign.c -o assign.o
clang: error: unsupported option '-fopenmp'

發現,執行的是 clang,而不是 clang-omp,所以在命令行執行

ln -s /usr/local/opt/llvm/bin/clang /usr/local/bin/clang
ln -s /usr/local/opt/llvm/bin/clang++ /usr/local/bin/clang++

只加一個 clang 的軟鏈接,后面會發現還會有個 clang++ 的報錯,因此需要 clang++ 也要加。

2018.5.23:安裝包“ddalpha”出現問題

ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang-6.0: error: linker command failed with exit code 1 (use -v to see invocation)

最后解決方法:

mkdir ~/.R
cd .R
vim Makevars

Makevars里面加上一句:

FLIBS = -L`gfortran -print-file-name=libgfortran.dylib | xargs dirname`

保存,再重新在 R 中安裝:install.packages("ddalpha") 即可。


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